January 03, 2008

The View from the Bath

If anyone is reading this and is also a subscriber to Physics World from the Institute of Physics, then you may have seen my latest effort at writing on topics in physics at the back of the January 2008 issue. It's in the "Lateral Thoughts" section, entitled "Post-modern Physics - bathtub style". The original title was "Post-modern Physics: the view from the bath", but that was too long for the magazine.

The view from the bath is a reflection on the fact that most of my best ideas come from meditating in the bath. To that end, we have just had a nice new soaker tub installed!


I will be adding a few more articles of this type to this blog as time permits. I will mostly be commenting on things that crop up in Physics Education, as opposed to Physics Research. Topics such as "What should we be teaching?" and "How should we be teaching?" are the order of the day. As I am teaching two courses of first year physics this term, my time might be a bit limited. As both of these courses are quite large (165 and 90 students respectively), teaching them requires extra attention and some different techniques to small classes. I'll try and mention my ideas.

Andrew Robinson, Physics and Engineering Physics

The Masters of Uncertainty

Some time ago, I was acting as the exam invigilator in one of our large first year Physics final exams. We were sharing the grim Saturday morning experience of a three hour examination with other classes in Economics and Sociology. Now in Canadian exams, the students tend to ask more questions than I was brought up to expect , coming from the British exam system, where nobody dares ask a question! This makes the invigilation a bit more stimulating, but only just. Confirming the worst prejudices of most physicists when it comes to sociology, all of the sociology students had left after 90 minutes, leaving the grim faced physics and economics students to sweat it out to the bitter end.

In a moment of boredom, I glanced at the rubric on the front of an abandoned Sociology paper. It was a multiple choice exam, and the instructions stated “Pick the answer which is most nearly right”. I made the comment to a fellow-Physicist that our students would hate that. First year students want “The Answer”, of which there is only one possible. But wait a minute, we are physicists. We understand the difference between accuracy and precision, we understand statistical fluctuations, we know that the Truth, the Whole Truth and nothing but the Truth has to have error bars appended, we quantify uncertainly and we wear our underpants outside our trousers. Sorry, got carried away there. So why do we have this variation between what we actually do, which is assign a certain uncertainty to every result, and what the general public, including first year students, think we do, which is to provide “The Answer”?

We can see this in recent debates and opinions in our local newspaper, the Saskatoon Star Phoenix, where there have been debates on global warming (which is an international socialist conspiracy, apparently), too much salt in the diet and energy saving light bulbs are a bad idea because of the mercury which they contain. Inevitably, the nay-sayers mention to a single article written by a scientist that dissents from the majority view and say, “Look there! A Scientist says this, so it must be correct”. This of course ignores the many other scientific articles which take the opposite viewpoint. As practising scientists we are used to weighing up the evidence, which may come from multiple sources, with a wide variation in credibility and conclusions, so that we can sum up our final position. Actually, non-scientists have to do exactly the same thing in real life too – a similar process goes on when you make a decision to buy a new car, for example. So why does the public think that we approach problems any differently? I think part of the problem comes from the science taught in schools. There are very few examples of problems set which have large quantities of data from different data sets, some of dubious quality or relevance, which then require critical examination. Obtaining “The Answer” for this type of problem may be difficult, if not impossible. Being able to do this sort of problem is very useful in many walks of life such as management, intelligence officers, child rearing, to name but a few. So why don’t we teach people how to do it?
When I came to mark the physics exam, I came across an answer to a problem which I had set on Young’s double slit experiment, where I gave a certain amount of information and required the distance between the two slits to be calculated. A classic example of a problem with “An Answer”! The periphery of the page was covered in a set of hieroglyphics which even Thomas Young himself, a noted translator of ancient languages, would have been hard put to translate. The only thing resembling an answer was near the middle of the page, where the phrase “Pretty close” was visible. Imagine my dilemma. Do I give marks, for what is essentially a true statement, or am I looking for the “Answer”. Fortunately, I was spared this tough decision; in the rubric for my exam, there was the instruction “No credit will be given for a correct answer without supporting working”. Some things are certain, even for the masters of uncertainty.

January 08, 2008

Who is this Andrew Robinson anyway?

It is a sad fact that Andrew Robinson is a rather common name in the English speaking world. Robinson is supposed to be the fourth most common surname after Smith, Jones and Brown. While I was a student at Bath University, the top rugby player at the local club (and an England International) was Andy Robinson. When I worked at BNFL for a while, the chief chemist was called, you've guessed it, Andrew Robinson. Now I am writing about physics, there is a very good author of biographies of famous scientists called, Andrew Robinson. His website is http://www.andrew-robinson.org/,

A quick look through Google also reveals other Andrew or Andy Robinson's associated with physics in various capacities:

Andy Robinson, Semiconductor Physics Group, Cavendish Laboratory and Andrew Robinson at the Dept. of Physics, Rochester Institute of Technology.

Finally, there is also Andrew J Robinson, an actor who player Garak on Star Trek Deep Space Nine (a tenuous link to physics)

If I've forgotten anyone, then as one Andrew Robinson to another, I'm sorry. Please let me know and I'll add you to the hall of fame.

If you need to contact me then please do so by e-mail at

andrew DOT robinson AT usask DOT ca

My website is http://physics.usask.ca/~andrew/robinson.html

But Is It Really Physics?

The motivation for writing this article has its origins in a design study project for final year undergraduate Engineering Physics students at the University of Saskatchewan, which I devised and supervised during the academic year 2005-6. Our students form design teams of 3 or 4 people and then tackle a design project over the whole of their final year which can be of any particular theme. These projects are devised either by faculty members or by collaborating scientists and engineers from outside research organizations, such as the Canadian Light Source, or the Saskatchewan Research Council. Some projects incorporate a considerable mechanical or electrical design component, others involve development of electronics systems and some are software development projects, usually aimed at solving a particular scientific or engineering project. The projects which were offered in 2005-6 included: a microcontroller based grain-dryer, software for calculating the optimum position for wind turbines for power generation, developing hardware based optical alignment systems for the Canadian Light Source and my own offering, development of a hardware accelerated search system for identifying proteins from mass spectrometry data. We find that these projects are extremely valuable in teaching our students a formal design process, project management and presentation skills, both oral and written.
My own offering for the project fell squarely in the area of proteomics [1]. The problem to be solved is to take a sample, of biological origin, and identify the proteins within it. The presence or absence of particular proteins is significant as indicators of disease, or other characteristics of the organism, such as drought resistance in plants. Proteins are large molecules, consisting of chains of amino acids which are not readily analysed easily, so the preferred method of protein identification is to use a chemical reaction to break up the protein into smaller fragments, known as peptides. Typically each peptide contains between 4 and 20 amino acid residues. We can then use an analytical technique known as tandem mass spectrometry to identify the constituent amino acids within the peptide and the order in which they appear in the peptide. This amino acid sequence in the peptide is usually a unique indicator of which protein the peptide originated from. There are 20 naturally occurring amino acids, each one of which can be represented by a single letter of the alphabet. The problem in essence is one of text searching for a small sub-string (the peptide) from a large number of very long strings (the protein sequence) . One solution to the problem the use of an electronic device known as a Field Programmable Gate Array (FPGA) system [2], which can be thought of as lots of logic circuits which can be configured as many parallel processors to carry out simple and repetitive tasks [3]. This is widely used as a digital signal processing device in the communications industry, particularly in cable television applications. This type of programmable electronic device falls in the computer science field for programming the device and developing the algorithms and electrical engineering for a detailed knowledge of the workings of the FPGA and many of the applications.
As you will have noticed, although protein identification is an important scientific problem in the life sciences, the directly relevant subject disciplines are anything but physics, hence the title of this article. However, it quickly became apparent (as I had hoped) that the skill sets required to solve this type of problem are ones possessed by final year undergraduate physics students.

Continue reading "But Is It Really Physics?" »